PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g01483.1.p
Common NameBRADI_3g01487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 379aa    MW: 43790.7 Da    PI: 7.4902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g01483.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-067192223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ Cg sF  + +Lk+H+++H
  Bradi3g01483.1.p 71 TCEECGASFQKPAHLKQHMQSH 92
                      6*******************99 PP

2zf-C2H220.99.5e-0799122223
                       EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                       +Cp  dC+ s+ rk++L+rH+ +H
  Bradi3g01483.1.p  99 VCPleDCPFSYIRKDHLNRHMLKH 122
                       69999*****************99 PP

3zf-C2H2171.7e-05127152123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++Cp   C+k+Fs k n +rH +  H
  Bradi3g01483.1.p 127 FTCPmeGCDKRFSIKANVQRHVKEmH 152
                       89********************9988 PP

4zf-C2H217.98.3e-06164188123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+   C+k F+  s Lk+H  +H
  Bradi3g01483.1.p 164 FVCKeeGCNKAFKYASKLKKHEESH 188
                       89*******************9988 PP

5zf-C2H2187.8e-06255279223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+  dC  sFs+ksnL++H++  H
  Bradi3g01483.1.p 255 KCTfeDCECSFSNKSNLTKHMKAcH 279
                       79999*****************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355332446IPR015880Zinc finger, C2H2-like
SMARTSM003550.00887092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.7577097IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-67190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576676.94E-1082124No hitNo description
Gene3DG3DSA:3.30.160.601.7E-991124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01798122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-7125153No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6125153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.0E-4127152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845127157IPR007087Zinc finger, C2H2
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-7160188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596164188IPR007087Zinc finger, C2H2
SMARTSM003550.0042164188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SMARTSM003557196221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SMARTSM0035513224245IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-5235276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-7236295No hitNo description
SMARTSM003550.0081254279IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489254284IPR007087Zinc finger, C2H2
PROSITE patternPS000280256279IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4278307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.891285311IPR007087Zinc finger, C2H2
SMARTSM003555.3285311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSSGDEISGD EMVEETHCRD IRRYKCEFCT VIRSKKCLIR AHMVAHHKDE LEISEIYNSD  60
GEKIIQEDEP TCEECGASFQ KPAHLKQHMQ SHSKERSSVC PLEDCPFSYI RKDHLNRHML  120
KHEGKLFTCP MEGCDKRFSI KANVQRHVKE MHEVENDTKS NQQFVCKEEG CNKAFKYASK  180
LKKHEESHVK LDYVEVVCCE EGCMKTFTNV ECLRAHNQSF HQYIQCDICG EKHLKKNIKR  240
HLRAHDTAVP TERIKCTFED CECSFSNKSN LTKHMKACHD QIRPFACRFA GCGKEFTYKH  300
VRDNHEKSSA HVYVEGDFAE MAEQLRSRPR GGRKRTAVTV ETLTRKRVTM PGEAVSLEDG  360
TEYMRWLLSG GDESRPAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-187421619155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-187421619155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573264.10.0PREDICTED: zinc finger protein 729-like isoform X3
RefseqXP_010233704.10.0PREDICTED: zinc finger protein 729-like isoform X2
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLI1HWC80.0I1HWC8_BRADI; Uncharacterized protein
STRINGBRADI3G01487.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-120transcription factor IIIA